| Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae | |
| Song, Yu; Yao, Xin; Liu, Bing; Tan, Yunhong; Corlett, Richard T. | |
| 2018 | |
| Source Publication | HOLZFORSCHUNG
 |
| ISSN | 0018-3830 |
| Volume | 72Issue:4Pages:337-345 |
| Abstract | Alseodaphne is a genus of timber trees (ca. 40 spp.) belonging to the Persea group of the Lauraceae. It is widely distributed in tropical Asia, but is often confused with Dehaasia and Nothaphoebe, and the systematics of the genus is unclear. Here, the complete chloroplast genome sequences of A. semecarpifolia will be reported, the type species of Alseodaphne, and two China-endemic species, A. gracilis and A. huanglianshanensis. The three plastomes were 153 051 bp, 153 099 bp and 153 070 bp, respectively. Comparative genomic analyses indicate that the three Alseodaphne plastomes have similar genome size and those are very different with previously published plastomes of Lauraceae in length. The length difference is directly caused by inverted repeats expansion/contraction. Four highly variable loci including psbD-trnM, ndhF-rpl32, rpl32-trnL and ycf1 among the three Alseodaphne species were identified as useful plastid candidate barcodes for Alseodaphne and Lauraceae species. Phylogenetic analyses based on 12 complete plastomes of Lauraceae species confirm a monophyletic Persea group comprising species of Alseodaphne, Phoebe, Persea and Machilus. |
| Department | 其他 |
| Keyword | Alseodaphne Candidate Barcode Chloroplast Genome Comparative Genomics Lauraceae Phylogenetic Relationship |
| Subject Area | Forestry ; Materials Science |
| Language | 英语 |
| Document Type | 期刊论文 |
| Identifier | http://ir.xtbg.org.cn/handle/353005/10850 |
| Collection | 2012年后新成立研究组 |
| Recommended Citation GB/T 7714 | Song, Yu,Yao, Xin,Liu, Bing,et al. Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae[J]. HOLZFORSCHUNG,2018,72(4):337-345. |
| APA | Song, Yu,Yao, Xin,Liu, Bing,Tan, Yunhong,&Corlett, Richard T..(2018).Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae.HOLZFORSCHUNG,72(4),337-345. |
| MLA | Song, Yu,et al."Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae".HOLZFORSCHUNG 72.4(2018):337-345. |
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| File Name/Size | DocType | Version | Access | License | ||
| Complete plastid gen（3227KB） | 开放获取 | CC BY-NC-SA | View Download | |||
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